Data
Normalization
Model options
Network processing
cor/cov method: pearson
Data
Normalization
See prepare.tcga.survival.data function for how to configure parameters.
This uses data packages from obtained from ‘github:averissimo/tcga’ that contain FPKM expression levels.
prepare.tcga.survival.data('luad.data.2018.10.17',
'primary.solid.tumor',
normalization = 'center',
log2.pre.normalize = TRUE,
handle.duplicates = 'keep_first',
coding.genes = TRUE,
subtract.surv.column = '')
## [INFO] Loaded data from TCGA: luad.data.2018.10.17
## [INFO] type of tissue: primary.solid.tumor
## [INFO] observations (individuals): 451 (162 event / 289 censored)
## [INFO] variables (genes): 19861
Network processing
cor/cov method: pearson
trans.fun is a double power to scale the valuessee ?glmSparseNet::heuristicScale or ?glmSparseNet::hubHeuristic
# see ?glmSparseNet::heuristic.scale
trans.fun <- function(x) {
heuristicScale(x) + 0.2
}
| ensembl_gene_id | degree | external_gene_name |
|---|---|---|
| ENSG00000150991 | 10394 | UBC |
| ENSG00000170325 | 6346 | PRDM10 |
| ENSG00000100300 | 5797 | TSPO |
| ENSG00000174775 | 5614 | HRAS |
| ENSG00000142208 | 5573 | AKT1 |
| ENSG00000111640 | 5363 | GAPDH |
| ENSG00000163631 | 5260 | ALB |
| ENSG00000177606 | 4952 | JUN |
| ENSG00000141510 | 4936 | TP53 |
| ENSG00000197122 | 4903 | SRC |
| ENSG00000254647 | 4592 | INS |
| ENSG00000112062 | 4187 | MAPK14 |
| ENSG00000170315 | 4114 | UBB |
| ENSG00000170345 | 4010 | FOS |
## [INFO] Size of sets: (size/events)
## * Train: 80.00% :: 360 / 129
## * Test: 20.00% :: 91 / 33
## [INFO] Number of variables per model:
| Model | BaseModel | Alpha | TargetVars | nvars |
|---|---|---|---|---|
| Elastic Net | Elastic Net | 0.10 | 110 | 117 |
| Hub | Elastic Net | 0.10 | 110 | 110 |
| Orphan | Elastic Net | 0.10 | 110 | 112 |
| Elastic Net | Hub | 0.10 | 56 | 60 |
| Hub | Hub | 0.10 | 56 | 56 |
| Orphan | Hub | 0.10 | 56 | 66 |
| Elastic Net | Orphan | 0.10 | 97 | 97 |
| Hub | Orphan | 0.10 | 97 | 97 |
| Orphan | Orphan | 0.10 | 97 | 99 |
## [INFO] note, selected variables could be slightly different from target, to have more accuracy increase nlambda in code
Calculated using the inferred models and the train/test datasets. The higher the better.
| weighted | penalization | project | tissue | cutoff | coding.genes | alpha | model | nvars | km.train | km.test | c.index.train | c.index.test |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| FALSE | string | luad.data.2018.10.17 | primary.solid.tumor | 0 | TRUE | 0.10 | Elastic Net | 117 | 0 | 0.0028686 | 0.7849739 | 0.6852922 |
| FALSE | string | luad.data.2018.10.17 | primary.solid.tumor | 0 | TRUE | 0.10 | Hub | 110 | 0 | 0.0773024 | 0.7977132 | 0.6416185 |
| FALSE | string | luad.data.2018.10.17 | primary.solid.tumor | 0 | TRUE | 0.10 | Orphan | 112 | 0 | 0.0300240 | 0.7941130 | 0.6339114 |
| FALSE | string | luad.data.2018.10.17 | primary.solid.tumor | 0 | TRUE | 0.10 | Elastic Net | 60 | 0 | 0.0020476 | 0.7492087 | 0.7052023 |
| FALSE | string | luad.data.2018.10.17 | primary.solid.tumor | 0 | TRUE | 0.10 | Hub | 56 | 0 | 0.0240581 | 0.7464789 | 0.6602441 |
| FALSE | string | luad.data.2018.10.17 | primary.solid.tumor | 0 | TRUE | 0.10 | Orphan | 66 | 0 | 0.0511146 | 0.7410191 | 0.6435453 |
| FALSE | string | luad.data.2018.10.17 | primary.solid.tumor | 0 | TRUE | 0.10 | Elastic Net | 97 | 0 | 0.0020476 | 0.7680804 | 0.6974952 |
| FALSE | string | luad.data.2018.10.17 | primary.solid.tumor | 0 | TRUE | 0.10 | Hub | 97 | 0 | 0.0773024 | 0.7881389 | 0.6429030 |
| FALSE | string | luad.data.2018.10.17 | primary.solid.tumor | 0 | TRUE | 0.10 | Orphan | 99 | 0 | 0.0131315 | 0.7837870 | 0.6345536 |
(not running at the moment)
| metric | model | base.model | target.vars | alpha | mean | std | median | min |
|---|---|---|---|---|---|---|---|---|
| C-Index (Test set) | Hub | Elastic Net | 110 | 0.10 | 0.617 | 0.050 | 0.617 | 0.431 |
| C-Index (Test set) | Hub | Hub | 56 | 0.10 | 0.623 | 0.051 | 0.624 | 0.418 |
| C-Index (Test set) | Hub | Orphan | 97 | 0.10 | 0.619 | 0.050 | 0.620 | 0.43 |
| C-Index (Test set) | Elastic Net | Elastic Net | 110 | 0.10 | 0.620 | 0.050 | 0.621 | 0.436 |
| C-Index (Test set) | Elastic Net | Hub | 56 | 0.10 | 0.624 | 0.050 | 0.625 | 0.449 |
| C-Index (Test set) | Elastic Net | Orphan | 97 | 0.10 | 0.621 | 0.050 | 0.621 | 0.443 |
| C-Index (Test set) | Orphan | Elastic Net | 110 | 0.10 | 0.606 | 0.050 | 0.607 | 0.413 |
| C-Index (Test set) | Orphan | Hub | 56 | 0.10 | 0.603 | 0.050 | 0.604 | 0.422 |
| C-Index (Test set) | Orphan | Orphan | 97 | 0.10 | 0.606 | 0.050 | 0.607 | 0.413 |
| Log-rank (Test set) | Hub | Elastic Net | 110 | 0.10 | 0.247 | 0.263 | 0.144 | 4.95e-07 |
| Log-rank (Test set) | Hub | Hub | 56 | 0.10 | 0.239 | 0.261 | 0.134 | 7.82e-07 |
| Log-rank (Test set) | Hub | Orphan | 97 | 0.10 | 0.237 | 0.257 | 0.138 | 6.26e-06 |
| Log-rank (Test set) | Elastic Net | Elastic Net | 110 | 0.10 | 0.253 | 0.266 | 0.146 | 9.45e-06 |
| Log-rank (Test set) | Elastic Net | Hub | 56 | 0.10 | 0.228 | 0.253 | 0.123 | 7.67e-06 |
| Log-rank (Test set) | Elastic Net | Orphan | 97 | 0.10 | 0.250 | 0.264 | 0.144 | 8.72e-07 |
| Log-rank (Test set) | Orphan | Elastic Net | 110 | 0.10 | 0.277 | 0.275 | 0.172 | 5.51e-06 |
| Log-rank (Test set) | Orphan | Hub | 56 | 0.10 | 0.288 | 0.278 | 0.185 | 2.37e-06 |
| Log-rank (Test set) | Orphan | Orphan | 97 | 0.10 | 0.278 | 0.274 | 0.175 | 5.51e-06 |
| base.model | r.squared |
|---|---|
| Elastic Net with target nvars: 110 alpha: 0.10 | 0.6616546 |
| Hub with target nvars: 56 alpha: 0.10 | 0.6473246 |
| Orphan with target nvars: 97 alpha: 0.10 | 0.6624709 |
| base.model | r.squared |
|---|---|
| Elastic Net with target nvars: 110 alpha: 0.10 | 0.8904119 |
| Hub with target nvars: 56 alpha: 0.10 | 0.8616601 |
| Orphan with target nvars: 97 alpha: 0.10 | 0.8879366 |
| base.model | r.squared |
|---|---|
| Elastic Net with target nvars: 110 alpha: 0.10 | 0.6262076 |
| Hub with target nvars: 56 alpha: 0.10 | 0.6196455 |
| Orphan with target nvars: 97 alpha: 0.10 | 0.6305587 |
| metric | model | base.model | target.vars | alpha | mean | std | median | min |
|---|---|---|---|---|---|---|---|---|
| C-Index (Train set) | Hub | Elastic Net | 110 | 0.10 | 0.785 | 0.011 | 0.785 | 0.746 |
| C-Index (Train set) | Hub | Hub | 56 | 0.10 | 0.733 | 0.012 | 0.733 | 0.689 |
| C-Index (Train set) | Hub | Orphan | 97 | 0.10 | 0.774 | 0.011 | 0.774 | 0.735 |
| C-Index (Train set) | Elastic Net | Elastic Net | 110 | 0.10 | 0.781 | 0.011 | 0.781 | 0.745 |
| C-Index (Train set) | Elastic Net | Hub | 56 | 0.10 | 0.738 | 0.010 | 0.738 | 0.705 |
| C-Index (Train set) | Elastic Net | Orphan | 97 | 0.10 | 0.771 | 0.011 | 0.771 | 0.734 |
| C-Index (Train set) | Orphan | Elastic Net | 110 | 0.10 | 0.784 | 0.011 | 0.784 | 0.744 |
| C-Index (Train set) | Orphan | Hub | 56 | 0.10 | 0.735 | 0.011 | 0.735 | 0.696 |
| C-Index (Train set) | Orphan | Orphan | 97 | 0.10 | 0.772 | 0.012 | 0.772 | 0.735 |
| Log-rank (Train set) | Hub | Elastic Net | 110 | 0.10 | 0.000 | 0.000 | 0.000 | 0 |
| Log-rank (Train set) | Hub | Hub | 56 | 0.10 | 0.000 | 0.000 | 0.000 | 0 |
| Log-rank (Train set) | Hub | Orphan | 97 | 0.10 | 0.000 | 0.000 | 0.000 | 0 |
| Log-rank (Train set) | Elastic Net | Elastic Net | 110 | 0.10 | 0.000 | 0.000 | 0.000 | 0 |
| Log-rank (Train set) | Elastic Net | Hub | 56 | 0.10 | 0.000 | 0.000 | 0.000 | 0 |
| Log-rank (Train set) | Elastic Net | Orphan | 97 | 0.10 | 0.000 | 0.000 | 0.000 | 0 |
| Log-rank (Train set) | Orphan | Elastic Net | 110 | 0.10 | 0.000 | 0.000 | 0.000 | 0 |
| Log-rank (Train set) | Orphan | Hub | 56 | 0.10 | 0.000 | 0.000 | 0.000 | 0 |
| Log-rank (Train set) | Orphan | Orphan | 97 | 0.10 | 0.000 | 0.000 | 0.000 | 0 |
Distribution of Log-rank test with groups separated by high and low risk groups
Distribution of Log-rank test with groups separated by high and low risk groups
| base.model | r.squared |
|---|---|
| Elastic Net with target nvars: 110 alpha: 0.10 | 0.2454922 |
| Hub with target nvars: 56 alpha: 0.10 | 0.2551984 |
| Orphan with target nvars: 97 alpha: 0.10 | 0.2470694 |
| base.model | r.squared |
|---|---|
| Elastic Net with target nvars: 110 alpha: 0.10 | 0.4486532 |
| Hub with target nvars: 56 alpha: 0.10 | 0.4108992 |
| Orphan with target nvars: 97 alpha: 0.10 | 0.4531178 |
| base.model | r.squared |
|---|---|
| Elastic Net with target nvars: 110 alpha: 0.10 | 0.2242910 |
| Hub with target nvars: 56 alpha: 0.10 | 0.2246238 |
| Orphan with target nvars: 97 alpha: 0.10 | 0.2303688 |
i.e. with pvalue < 0.05 in Log-rank test using the test set.
i.e. with pvalue < 0.05 in Log-rank test using the test set.
| Gene | Overlap | total |
|---|---|---|
| PITX3 | 2 | 8194 |
| VAX1 | 3 | 7850 |
| RHOV | 2 | 7637 |
| RHOF | 2 | 6870 |
| PLEKHB1 | 2 | 6322 |
| ABAT | 3 | 6055 |
| PRKCD | 2 | 5877 |
| CLEC17A | 2 | 5725 |
| STAP1 | 2 | 5667 |
| MELTF | 2 | 5655 |
| SPANXA1 | 3 | 5571 |
| FAM83A | 2 | 5401 |
| HSPA4 | 2 | 5371 |
| RHOQ | 2 | 5354 |
| NOS3 | 2 | 5311 |
| BEX4 | 2 | 5242 |
| MYLIP | 2 | 5131 |
| C1QTNF6 | 2 | 5112 |
| GNG7 | 2 | 4934 |
| LDLRAD3 | 2 | 4806 |
PITX3(8194), VAX1(7850), RHOV(7637), RHOF(6870), PLEKHB1(6322), ABAT(6055), PRKCD(5877), CLEC17A(5725), STAP1(5667), MELTF(5655), SPANXA1(5571), FAM83A(5401), HSPA4(5371), RHOQ(5354), NOS3(5311), BEX4(5242), MYLIP(5131), C1QTNF6(5112), GNG7(4934), LDLRAD3(4806), BTN2A2(4792), DKK1(4731), ZFAND4(4706), MAPK13(4652), CRYGD(4645), GAPDH(4590), PRKACB(4567), AKT1S1(4567), ABL1(4536), PLEKHA8P1(4534), CD200R1L(4526), TLE1(4500), CPS1(4494), DTNBP1(4466), NRAS(4451), ACTC1(4420), TSPO(4415), UBC(4390), INAFM2(4382), FURIN(4375), LCK(4239), KRT6A(4216), SLC46A3(4182), ZNF479(4162), CCDC181(4075), PSKH2(4034), IER5L(3993), DECR1(3982), TMEM130(3979), SAMD13(3958), FYN(3949), INSR(3905), PIK3CG(3895), KRAS(3890), HSDL1(3880), CDC42(3801), RRAS(3793), KIR3DL2(3761), RUBCNL(3738), ABCC2(3715), TNF(3631), KLHDC8B(3615), CCDC149(3585), FMO3(3583), CLEC20A(3565), LCE5A(3553), PRDM10(3536), PRKCA(3528), UMPS(3521), MAPK11(3484), STIMATE(3391), E2F7(3379), KIT(3379), MSLNL(3374), INS(3367), FLNC(3340), LOXL2(3319), FUT4(3310), CDK15(3308), C18orf54(3290), CALB2(3266), CIDEC(3265), ENPP5(3264), GATA4(3245), EEF1E1-BLOC1S5(3236), MSANTD3-TMEFF1(3235), EPHX1(3233), GLI2(3229), AKT1(3195), RPS6KA1(3191), MYO6(3128), TNS4(3053), GSK3A(3031), OASL(3008), UBL4B(2973), PLCD3(2950), EMC6(2923), KIR2DL1(2911), NLRP5(2902), ANKRD65(2885), UCN2(2867), ITGA2(2858), RPS6KL1(2823), F2(2783), FAM210B(2779), RCVRN(2778), HRAS(2766), OAS2(2722), GOLGA6D(2710), GATD3B(2700), ACTA1(2674), TP53(2661), TYRO3(2649), EGFR(2583), CDKAL1(2567), RAD23B(2524), LDLRAD3(2480), OR14C36(2479), LCE1D(2474), ZC3H12D(2473), ACTBL2(2459), ALB(2447), USP4(2432), PPP3CC(2414), LINGO2(2387), IRX5(2383), POTEJ(2368), KCNV1(2367), ZNF165(2366), TSPY3(2355), C19orf48(2348), EHMT2(2340), PPP1R13B(2325), SRC(2319), KYNU(2314), CPXM2(2314), GGACT(2265), ENSG00000270168(2256), KRT38(2245), ANKRD53(2242), TM4SF19(2238), GJB3(2225), RASSF10(2225), MGAT5B(2203), ANGPTL4(2183), MAPK4(2175), VEGFC(2175), CDK4(2167), RAB11A(2164), VDAC1(2127), SLC4A8(2097), PTPRH(2092), TSPAN11(2069), IGF2BP1(2055), RAMACL(2046), TCP10L2(1995), RIPK4(1994), RAC1(1993), PPP3CA(1982), CDY2B(1981), AP000311.1(1967), ACTR1B(1961), FGFR1(1954), ACTRT3(1947), GOLGA6D(1945), ANO4(1934), NTSR1(1928), AP000311.1(1925), MCM5(1916), CCL3L3(1915), GALNT2(1906), MRAS(1890), ST13(1889), KRTAP7-1(1880), AC245033.1(1861), CDK1(1858), ZNF750(1831), GLCCI1(1829), DTNBP1(1824), CALM3(1822), HSPA8(1808), HOXA13(1799), MAPK7(1799), OAS3(1797), VEGFA(1794), UPK1B(1745), RHOH(1741), AC011452.1(1736), ADM(1722), AC010325.1(1688), NEIL3(1686), TMEM171(1686), MYC(1686), APOC4-APOC2(1684), SEPTIN2(1683), ATF7IP2(1662), CDIN1(1642), TMEM215(1639), TPGS1(1635), NFKB1(1634), STK11(1626), ACTR3B(1623), SMAD3(1611), TOMM34(1604), AKT2(1575), MESD(1569), TSPY1(1555), LATS2(1547), TRIM6(1541), CIDEB(1540), NLRP8(1525), HLA-DOB(1525), INSL4(1517), HERPUD1(1516), AHSG(1516), PRAMEF1(1510), C5AR2(1507), PRKCG(1507), ZDHHC11B(1502), STOX1(1499), FDXACB1(1496), MARCHF4(1495), MAPK1(1494), JUN(1492), PRORY(1480), RHCG(1479), HLA-DMA(1474), TMEM25(1448), CA5B(1420), UBL4B(1415), HPF1(1412), FHAD1(1412), MAGEA5(1404), MAPK12(1401), UBB(1400), CFTR(1396), WWC2-AS2(1390), IRX2(1372), GNPNAT1(1368), KIR3DL2(1366), ZNF502(1363), AQP8(1357), PLEK2(1350), TCTA(1347), ISCU(1338), OR7E47P(1337), SFTA3(1328), BEST4(1326), TOPAZ1(1318), CATSPERE(1318), STK11(1302), CALN1(1300), CD79A(1297), MSANTD3(1290), CSNK1E(1290), TMEM256-PLSCR3(1284), BCRP2(1283), MUC2(1280), USP4(1275), EPHX1(1270), CCT6A(1270), WT1(1264), SLC47A1(1257), SNN(1249), MACO1(1241), UCK2(1239), C22orf46(1238), UBL4A(1238), TEX26(1235), RHOXF2(1219), CALM2(1209), ACTA1(1196), BEX5(1184), TFDP1(1181), SIX5(1176), FIBCD1(1174), UBD(1173), WARS2(1165), WNT1(1157), IRX5(1152), RAC1(1144), ENO3(1143), IKZF4(1133), INPP5A(1117), CD8B2(1108), MAPK4(1103), C3orf18(1101), CTNNB1(1100), TTC24(1099), SSX2B(1096), IGF2BP1(1091), KLF14(1090), LDHA(1088), MAPRE3(1086), RPS6KB2(1082), EPHB2(1075), ANP32A(1073), AMDHD1(1069), TERT(1069), GPD1L(1066), FDCSP(1060), FRZB(1053), C11orf16(1046), PHLPP1(1042), GALNT11(1041), PSTPIP2(1037), TRIM39(1036), ACTL6B(1036), INO80B-WBP1(1025), FAM117A(1023), MTMR12(1023), CDH1(1021), MAPK14(1021), GMPS(1018), NPAP1L(1018), C20orf141(1015), DNAJC28(1010), C1orf141(1005), AC005726.1(997), MAPK7(996), ACAT2(992), RHOH(979), SAMM50(977), AKTIP(977), AKAP12(974), UNC5D(971), MAPK3(965), AP3S1(961), CXorf21(960), C6orf62(959), JOSD1(951), ACSM5(945), IGFBP1(944), VSTM2A(942), HDAC4(942), MET(939), ACTB(937), FAM184A(935), YES1(921), STK33(918), NPAS2(915), GDPD2(913), CLDN16(913), KRT81(906), SMS(903), WFDC3(896), TCN1(890), PRKAR1A(887), GCG(886), GUCA2B(880), KLK8(879), YWHAE(879), SPATA22(873), KBTBD8(873), NINJ2(865), SEC61G(859), SPDL1(856), ACTL7B(856), LCE1D(854), CPA5(847), FAM76A(844), ENSG00000278500(833), CCDC184(833), TNNT1(830), OR10Z1(828), B3GALT1(823), LANCL2(820), HLA-DQB2(819), FUCA1(817), FBN2(812), CERS4(809), ARL4D(808), EPN1(807), C7orf77(806), TXNDC11(804), ACSBG1(803), BAIAP2L2(799), FRRS1(796), PEBP1(795), CSNK2A2(794), KRTAP11-1(792), FGF12(790), FGF2(790), CCR2(783), RHOA(781), CERS4(776), BMP15(776), NLRP5(767), NOTCH1(764), ARG2(762), DNER(757), AC005697.1(757), OR10Z1(755), TOR4A(754), TM6SF1(752), MYH14(752), OSR1(745), GDPD2(743), SMG9(739), RHOD(736), MTURN(736), HSPA2(734), PIM2(733), CABP2(728), LINC00324(720), BTN2A1(717), HDAC5(716), PSMD2(716), FAM9C(713), CDKN2A(708), AC233723.1(707), CTSL(703), HDAC9(702), ANK2(699), TK2(697), CD8A(688), ADM(687), ECT2(685), MYO18B(683), TDRD1(681), SHC1(681), PSMB7(681), HRH3(678), TMEM81(672), ZP2(671), FOS(669), TMEM44(661), ANGPTL4(661), GPR78(660), CERS4(659), TMEM50B(656), DMC1(655), ENSG00000260300(652), CRYGD(651), CERKL(649), CMTM7(648), NRG4(648), POLR1G(647), SERBP1(641), CLEC18A(641), PPP1R21(639), LRIG1(638), ACTA2(636), FSCN1(635), PRKX(635), DENND1C(633), CDC42EP2(630), XXYLT1(630), RPS4Y2(627), LYN(627), YWHAG(626), PPP1R3G(624), HSP90AB1(624), ORMDL3(623), GRIK2(620), UTS2(612), DEDD2(610), RAC3(610), TRIM38(607), KIR2DL1(607), BCAN(607), GABRG1(601), LYPD3(594), ACTR10(586), C11orf52(583), CCT2(579), FKBP4(577), CIDEA(575), F8A2(573), EPHA6(571), GOLPH3(570), RIT2(570), ADH4(569), CDX2(568), UGT2B11(564), SMOX(561), ACO2(561), ENSG00000255863(558), ARG2(555), AURKC(552), RAB25(552), SIRT1(551), PRKAG2(548), CR2(548), TRIM28(545), LETM2(545), LURAP1(540), LILRA4(534), ZBTB18(532), DIRAS1(530), OAS1(529), EGR2(527), TFAP2A(527), DUX4L9(527), OR1F1(524), ACSM5(524), HRCT1(517), ZFP3(517), PCSK9(516), ARL14(511), OR2J3(508), SPIN4(501), FAM207A(500), NXNL2(495), HSP90AA1(495), XRCC6(491), IFNE(489), NPY5R(488), MTHFS(487), ADCY10(482), CA2(480), HSPA9(479), CHCHD4(479), FOXB1(479), ADCY2(475), SLC35G2(473), CDIP1(471), HDAC1(471), LDHA(470), BTK(468), AC069257.3(466), GATA3(466), XAGE1B(464), HSPA2(461), BPIFB1(459), YWHAZ(458), PZP(457), EPHA5(456), NEUROD1(455), TUBAL3(455), TGFB1(453), SDK1(449), PXK(447), ACCSL(446), ISL2(445), C12orf76(444), ACSL3(441), LRP10(441), EFCAB8(441), RRAD(441), TF(438), POTEI(438), LEF1(437), ACTRT1(436), FAM72B(435), MZT2A(433), TTC32(427), MEAF6(425), NFKBIA(425), C1orf94(424), MAPK12(424), DSG2(423), MKKS(421), OR2A7(420), FGF8(420), C2orf42(419), GJA5(419), CPA2(415), RGS20(415), PPIAL4A(414), BCL2L10(411), KLF10(410), RPE65(409), PRAMEF2(409), ENOX1(407), LY6K(407), OPA3(406), XCR1(405), STK32A(405), OLFM1(404), FBXO31(403), FAM43B(403), PRKN(403), RRAS2(402), FAM131C(401), ACTG1(400), TMEM241(399), FUT1(399), SDCBP2(397), C1QL2(395), B4GALT6(394), ACSL3(393), ZIC5(393), ZSCAN26(393), NPB(392), TP53I3(390), RPE65(389), C15orf56(388), ACTL8(388), PFKP(383), C7orf69(381), FBXL21P(380), PLXND1(379), ASB3(378), FAIM2(378), POPDC3(377), DNAJB4(377), HSPA6(377), NXPE2(377), TBP(376), CYP17A1(373), DRP2(371), ADA2(370), CREG2(369), DMRTC1(368), PELI1(365), CDK2(363), CASP14(361), MEGF8(361), SST(361), CAMTA1(360), NPAS1(359), AP2M1(359), CALM1(358), GTF3C6(357), CDH17(356), INGX(356), GCK(355), SQLE(353), LGR5(353), LRFN4(353), TTC16(352), CNMD(351), OR2A7(351), YWHAH(351), BTBD9(350), FXYD2(349), CDCP1(345), TMA16(345), CAT(344), ANKUB1(343), KIR2DP1(342), BCL2L1(342), PITPNC1(341), RND3(341), LRRC66(339), PRAMEF14(339), SARAF(336), RHOC(335), TFEB(334), SPANXD(334), SPATA7(333), KDM8(333), EPHA1(333), BCL2(332), PHF1(331), SST(331), PPP1R1C(330), GNAO1(329), AKTIP(328), AC245033.1(326), ANLN(323), TAS1R2(321), CCDC88C(318), PTCHD4(315), STX3(315), GRWD1(313), COX7B2(312), ASCL3(311), NGEF(311), PPEF1(310), GAK(309), LRRC3B(307), GUCA1C(306), ANO3(305), PRR30(305), ECT2L(305), FAM83D(304), CTSL(304), STK17B(303), VWA2(302), CDKN1B(302), TYMS(302), KRT38(301), TMEM11(300), JAK1(299), TRPA1(298), PLEKHG3(298), ZNF77(298), PPP5C(295), NUMBL(295), ANKRD13A(294), TMEM52B(294), KIR2DL3(293), NPC2(292), ATG9B(291), POTEE(290), STK24(289), MAFK(288), TUBB4A(288), GSK3B(287), GATA2(287), GEM(286), SELENOK(285), AL603832.3(285), CTCFL(284), ZNF25(284), FDPS(283), PAOX(282), AP003419.1(282), CDK16(281), PKP2(280), ATP2A3(280), SQLE(277), TXN(277), DNALI1(276), PRPS1L1(276), SMIM35(276), PPM1M(275), AC011511.4(275), SLC7A10(273), HINT3(272), CLEC4F(272), TENM3(271), IGFBP1(268), DAAM2(266), PPID(266), ARRB1(265), KLF10(265), MRAS(264), MAOB(262), C3orf33(262), GPI(261), ACTR2(261), MAPK1IP1L(260), TMEM196(260), ERO1A(260), NANOS1(259), ELMO2(258), EXOSC6(258), DNAH8(258), EPHA7(258), FGF1(257), KRTAP21-1(256), SCGB1C2(256), NLRP2(255), CCL4L2(255), SETDB2(255), MIEF1(254), RIPK1(254), CAPS(253), FAM133A(253), PKN3(252), HSPA1L(252), AL691442.1(251), ENTPD1(251), RAET1G(250), SYK(250), RAB11FIP4(249), B4GALT4(248), RAD51(247), IAPP(247), C6orf223(246), HOXA7(246), EGLN1(245), PRKCB(245), LRIG1(244), OR10G3(244), CYP2F1(244), LGR4(244), PPP3CB(243), SYT8(243), ACTR8(243), GPR63(240), ALK(240), TMED1(239), CCR6(239), MERTK(239), TLNRD1(237), GOLGA6C(237), RCAN2(237), SMAD3(235), ZNF184(233), MPV17L(233), FRS3(232), C9orf64(232), UBQLN1(232), LY9(231), MTUS1(230), TPPP(230), ACLY(230), FAM72A(228), SYT10(227), ATP8B3(226), CDK5(226), GLI3(224), GLS2(224), GRAMD1B(221), TULP2(221), RB1(221), PCDHGA3(221), CDH7(220), TBXT(220), TENT5C(220), LRFN3(219), RHOB(219), RAD51D(218), DSG3(217), FLT3(215), TLR3(215), SGK3(214), MAP6(214), NPY(212), CSF1R(212), OCM(211), SLC26A4(210), B3GALT2(209), UGT2B28(208), AC008687.1(208), NOS1(208), SLC6A17(207), LRFN4(206), ZNF560(206), STRIT1(206), RAP1B(206), SPSB1(204), BCL2L13(203), SLC6A18(203), AL035460.1(203), ACSL3(203), AC010542.3(202), TCP1(200), ATG4A(199), F9(199), OCM(198), EGR1(198), SPX(197), CCDC13(197), VCY(197), GTF2B(196), MYBL1(195), FKBP9P1(194), CNTNAP3(193), MTHFD1(192), AC104581.2(192), WDFY2(192), PKP2(191), KIRREL3(190), ADIPOQ(190), COL4A6(188), TRPC6(187), PNPLA7(187), NEDD4(186), MFF(186), ATP6V1B2(186), NOXO1(185), KCNG1(185), GLI1(185), SORT1(184), AQP4-AS1(184), UBE2S(182), FOXO3(182), LINC01036(181), NME8(181), SEC14L2(181), TNNC2(181), RAET1E(181), SMIM15(180), AC244517.10(180), NME1-NME2(180), ARMT1(179), FRMPD2B(179), MAGEA9B(179), L3MBTL3(178), LIMK2(178), PPP2CA(177), RASL10A(176), C6(174), AC008763.2(174), RHOD(174), RGS20(173), WDR4(173), NUP50(172), REM1(172), RHEBL1(172), PPIA(172), FCRLB(171), PRKCB(171), KIF18A(171), TNFRSF11A(170), NGRN(170), CAMKK1(169), RIPK3(169), ZDHHC13(169), FCRLA(168), DMC1(168), TXLNB(166), CD79A(166), STK26(165), JAGN1(165), COL7A1(164), TREM1(164), TRIM7(164), SNAI3(164), ANP32B(163), CDC42EP5(162), PNMA8C(161), SPATA6(159), DDIT4(158), TRIM28(157), RB1(157), BCL2L2-PABPN1(157), SNAI2(156), ELAPOR1(156), HLA-DMB(155), CH25H(155), C5orf38(155), MT1HL1(154), SNTG2(153), HLA-DRB5(153), DAAM2(153), HJURP(152), CRYBA4(152), TFRC(151), RAET1L(150), FAM177B(150), HHIPL2(149), RUNX2(149), NPR1(149), XRCC5(148), RAP2C(148), MUC7(147), AC026464.1(147), CLCN1(147), FRMPD2(146), MCF2(145), GPR153(145), PTEN(145), SERBP1(144), SLC16A1(144), SLC10A2(143), TMX3(143), KLHL38(143), ZNF534(143), FBXO16(143), PITX1(141), LINC01036(141), NPIPA9(141), DUSP2(141), KRT83(140), NPY1R(140), CD177(139), TTC34(139), ACTG2(139), RBBP7(138), PRXL2C(138), AP000295.1(137), TMEM174(136), C12orf76(135), CXCL17(135), C1QL1(134), MTCL1(134), FAM74A4(134), EP300(134), SLC22A17(133), POLR3G(133), IFNLR1(133), GNAI1(133), GDPD2(133), CDH24(132), MFSD6(132), KSR2(132), AC010255.2(132), CCPG1(132), RHOU(132), GALM(131), ETV3L(131), POLR2C(131), ISL2(130), OR10G3(130), CNTNAP2(130), CALML5(130), ZCWPW2(130), VPS18(129), GPR31(129), CWC25(129), CTU1(128), ACTL10(128), IKZF3(127), TMEM52(127), C2orf80(127), CXCL17(127), NPIPA8(127), FGFR2(127), AQP8(127), ISG15(127), ZNF488(127), CUL4A(126), ZNF266(126), TMPRSS3(125), BEGAIN(125), CD4(125), AR(125), TMEM164(124), PCP2(124), MAP3K7(124), ANKEF1(123), CTSV(123), C16orf74(123), IGF1R(123), AIPL1(122), PPARG(122), CLPB(122), STRIP2(121), ST13P5(121), FOXP3(121), AL024498.2(120), MFHAS1(119), TEX9(119), EIF2AK3(119), CAMK1D(119), SLC52A1(117), MS4A1(117), SOWAHC(117), MGP(117), INSIG2(117), KLF4(117), AC004080.3(115), CHKA(115), VSX2(114), HK2(114), ANKRD40CL(114), EXO1(114), LRRC10B(114), EDAR(113), KRTAP2-3(113), PSMA4(113), CTU1(113), SLCO1B3(112), PDE6B(112), OLAH(112), PCP4L1(112), ADRA2B(112), PDE6B(112), CYP2A13(112), UBA52(112), KAT8(111), LCMT1(111), KDR(111), GART(111), ERO1A(111), MTOR(111), GMPR(110), GPHA2(110), KCNJ6(110), MYB(110), LONRF2(109), RALA(109), KIF19(109), TMX4(108), FIGLA(108), IRAK2(108), HS6ST1(107), PRIMPOL(107), HNRNPC(107), PRKG2(107), SNTB1(106), CCDC153(106), ANP32E(105), RHOBTB2(105), GNAI1(104), GRIN2A(104), GSTA3(103), EXT1(103), EIF2S3(103), ADIPOR2(102), GUCY2C(102), PNPLA3(102), SCD(101), CDKL2(101), ADGRD1(100), SHISAL2B(100), EIF2S3(99), PPP5C(99), PRRT3(98), RPP25(98), DMD(98), CLDN23(98), AC024592.3(98), KLF1(98), HSPA1A(98), CCER1(97), PCDHGC5(97), BLK(97), DUT(96), TM4SF20(95), SIGLECL1(95), PCDHAC1(95), UBE2S(95), PLPPR1(95), C19orf54(94), ARG2(94), EDAR(94), UBLCP1(93), TMED7-TICAM2(93), PADI6(93), POLR1C(93), EVX1(92), FAM71E1(92), AC104109.3(92), TSPY1(92), HS3ST2(91), SLC18A2(91), KLHL6(91), H2AC19(91), SNTG2(91), KLC3(90), MAP3K8(90), PTK7(90), CD200R1(90), GPR37(90), FBXO46(90), TMEM89(90), GSTM2(90), RHOBTB1(90), DDX24(90), IL17F(90), ALDOA(90), AP2A1(90), OIP5(89), PRKAR2A(89), SLC66A1L(89), PCDHA7(89), HSPA5(89), HDAC2(89), ZAN(88), FCRL1(88), KIAA2012(88), DIAPH3(88), LYPD5(87), GPX8(87), ADAMTS15(87), RWDD4(87), TRIM16(87), RND2(87), CCND1(87), OSCP1(86), PCDHB8(86), CD1E(86), SAAL1(86), PLK1(86), C8G(86), GOLGA8G(86), SRGAP1(86), VSTM5(86), AC005943.1(85), PCSK2(85), SALL1(84), ADGRF5(84), CENPM(84), CASC3(84), SERPINB7(84), GCSAML(84), ZNRF3(84), MLLT6(84), RAB7B(84), EEF1A2(84), FXR1(84), BDNF(84), ADH4(84), RFXAP(83), ZNF512(83), BMX(83), DIRAS2(83), WDR47(82), IRAG2(82), PLD4(82), AC073610.2(82), ZNF516-DT(82), PRKAG2(82), ENY2(82), TSPY2(82), ZNF280A(82), RMC1(81), ZNF394(81), OR2W5(80), GOLGA8S(80), DNM1(80), FAM9A(80), XRCC6(80), EVX1(79), LHX2(79), RNASE10(79), PCDHA13(79), ERCC1(79), PNPLA6(79), FOXN4(79), CXorf56(78), DMAC2(78), OTUD7A(78), ADGRG3(78), TCEAL3(78), BMP4(78), ARF3(78), RNASEL(78), GRIK2(78), RCAN2(78), AC097637.1(78), CALML5(77), HLA-DQA1(77), CYRIA(77), TUBA3C(77), PRB1(77), DOK1(76), SLC6A14(76), OR52E2(76), CRCT1(75), SLC6A2(75), CDSN(75), LYZL6(75), GPR1(74), DYRK1B(74), PRKAR1B(74), MAGEA9B(74), MDFI(73), CAPN13(73), PYGB(73), MGMT(73), ZKSCAN4(72), DNAJC1(72), FBN2(72), GGT6(72), LMNB2(72), SCPEP1(71), SLC22A23(71), MSX1(71), NCAM2(70), C10orf53(70), LRRC10B(70), RBMY1F(70), RDH16(69), SLAMF9(69), CAMK1D(69), ITGA6(69), FBXL21P(69), ACCSL(69), SALL1(68), ASCL2(68), PRSS3(68), RASD2(68), CA9(68), IL4(68), FAU(68), CDC25C(68), AC099811.2(68), ACRBP(67), DYRK4(67), RHOXF2(67), CPA5(66), PENK(66), FKBP3(65), ARMC12(65), AC073283.3(65), RHOBTB3(65), LPCAT2(64), CRHR2(64), MCTP2(64), KCNMB1(64), STARD4(64), ZCCHC4(64), BDKRB2(64), MANSC4(64), ELFN2(64), MS4A13(64), AK6(63), GYS1(63), FRMD8(63), DNAJC1(63), CPLX2(63), FAM189B(63), RNF180(63), SLC25A1(63), PHF1(63), TP53RK(63), SPATA13(63), PADI6(63), ZNF275(62), SNCAIP(62), CATSPERG(62), TRIM62(62), TMEM253(62), PHF5A(62), AQP4-AS1(62), FUCA2(61), ERCC1(61), CD99L2(61), MYL7(61), SSUH2(61), MLKL(61), MAL(61), VANGL1(61), CTAG1B(61), RBM8A(61), STK17B(61), ESR1(61), TTBK1(61), ASCL2(61), FNDC10(61), CBFA2T3(60), DCAF12L2(60), NEU1(60), COL28A1(60), CD9(60), NSUN7(60), CRISP3(59), CST8(59), IGF2BP3(59), TH(59), GPRIN2(59), KLC3(59), PIK3CA(59), DDX56(59), CPAMD8(59), KRT32(58), ST3GAL4(58), SLC2A4(58), AC004080.3(58), SPATS2(57), FAM104A(57), PPT2(57), TLE7(57), AHSA1(57), TSPOAP1(56), MT3(56), THYN1(56), C16orf54(56), RMDN2(56), SLC25A47(56), KLHL1(56), DNAJB4(56), HDAC3(56), UHRF1(56), EXPH5(55), TMEM143(55), CSMD3(55), MYO19(55), COL7A1(55), UBE2M(55), FAIM2(55), PKDCC(55), CTLA4(55), LRRC66(55), AMHR2(54), GTSE1(54), STEAP1B(54), KRT85(54), IL22RA1(54), COPG2(54), TCHHL1(54), PRB4(54), RTL5(54), UBE2Q2L(54), EIF3M(54), KCTD12(54), PAPLN(53), OR10H2(53), LINC00305(53), CTAGE15(53), RASD1(53), FAM219B(53), BTG2(52), HSD17B13(52), MAP3K19(52), NDUFA10(51), HSF2BP(51), C5orf64(51), ZNF879(51), CCR6(51), RASL11A(51), KDM6A(51), ZNF185(51), DMTN(51), CYB5R1(51), B3GALT1(51), RAP2B(51), RIPK2(50), IVD(50), LUZP2(50), AC092073.1(50), SQLE(50), RNF130(50), VWA3B(50), PPP2R2D(50), PRAC2(50), CDK3(50), ERLIN1(49), URM1(49), RIMS2(49), AHNAK2(49), JAK2(49), YY1(49), SMARCAL1(49), RPS6KA4(49), NBDY(49), CD40LG(48), KCTD15(48), UQCRB(48), CNBD1(48), C17orf107(48), MAPK6(48), PRDM2(48), MAPK15(48), LGALS17A(48), HMOX1(47), MRPS27(47), CASZ1(47), BTBD16(47), INTS7(47), KLHL8(47), MBIP(47), PCDHA4(47), FADS3(47), C1QTNF9(47), PNMA2(47), TRIB2(47), HSPA6(47), NDNF(47), NOTUM(47), PRRG1(46), LCA5(46), HSD17B13(46), FCRL6(46), ATP6V1E2(46), ZNF576(46), FAM83F(46), AC011452.1(46), CCDC28A(45), TMEM38A(45), CYREN(45), CHD1L(45), CENPU(45), AP1S3(45), NDST2(45), SLC22A12(45), TUBA3D(45), CDK6(45), NEDD9(45), CXCR4(45), CDKN1C(45), FAM83B(45), GPR35(45), CYP2F1(45), CLEC7A(44), LY6G5C(44), OR13A1(44), SNX29(44), TICRR(44), TENT5A(43), APOL2(43), TDRD1(43), ACO2(43), RBPJL(43), CD109(43), PRKACG(43), GAS2L1(43), SYT6(42), TMEM217(42), VPS37D(42), NPIPA5(42), SH2D5(42), CCDC28A-AS1(42), PRKACA(42), CREB1(42), P2RY13(42), CDH19(41), KPTN(41), NUPR1(41), TRIM27(41), LYRM9(41), SEMA3A(41), FLT1(41), NCL(41), WASHC2C(41), PPARA(41), COLCA1(41), HLA-DOA(41), KLF5(40), NGF(40), FAM156B(40), PCDHA12(40), FAM47E-STBD1(40), HTATIP2(40), CD5(40), SATB2(40), ATP8A2(40), SLF1(40), ZCCHC14(40), ECE2(40), PDE4B(40), FAM47E-STBD1(40), ZNF576(39), MNX1(39), CNPY1(39), PIP4P1(39), TAPT1(39), FOXL1(39), IZUMO1R(39), MFSD6L(39), AL136295.1(39), CISH(39), HMGN3(39), TUBAL3(39), SBK3(39), ENPP4(38), HAVCR1(38), GABRA2(38), PGS1(38), PCSK5(38), GRM6(38), CNNM1(38), ADCY9(38), KLHDC9(38), ALK(38), SMARCA1(37), PMS2P5(37), SWAP70(37), FAM110C(37), DCX(37), CDC5L(37), AL355916.3(37), AC073283.3(37), HAGH(36), TNFSF14(36), FRMD6(36), PRRT1(36), MAGEB1(36), TMEM233(36), AC004076.1(36), EPHA3(36), VPS18(36), ZDHHC2(36), YAP1(36), EPHA2(36), SLC27A4(36), MAP2K1(36), TENM3(36), AC069257.3(36), MSH4(35), NUCB2(35), B4GALT1(35), PIR(35), CCL20(35), PIK3CD(35), FADS6(35), UMODL1-AS1(35), PAX5(35), AC026954.2(35), HGF(35), EVX1(35), RET(35), EPHB3(35), RMDN2(34), HABP4(34), FGFBP1(34), MR1(34), MARVELD1(34), SETD3(34), SHISA4(34), EEF1G(34), HRH3(34), RERGL(34), RNASE1(34), REEP2(34), HEY2(34), C7orf69(34), SFTPB(34), LRRK2(34), PSMC6(33), RAB29(33), CPA2(33), LDHD(33), SEPTIN1(33), LINC00477(33), GAB2(33), MFSD12(33), LRRTM1(33), ADAD1(33), FADS6(33), C3orf85(33), BORCS8(33), ZMYND12(32), DESI1(32), NMI(32), CCDC51(32), TMEM64(32), MEIKIN(32), HMMR(32), SGK1(32), GPAM(32), DCLK1(32), NKX2-1(32), PAOX(32), PPID(32), CHEK2(32), SHISA4(32), PDE10A(31), ONECUT2(31), C10orf95(31), FLRT1(31), UBAC2(31), ZNF787(31), FARS2(31), ADAMTS3(31), RIMBP3C(31), H2AX(31), ZSCAN16(31), CAMKK1(31), PVR(31), WDR91(31), MISP3(31), RIT1(31), TMEM233(31), NCOA4(31), ELP4(30), C9orf40(30), LUM(30), GPATCH11(30), IRX6(30), FSIP2(30), AP000781.2(30), OCM2(30), RNF180(30), TGIF1(30), TMEM125(30), KCNE1(30), SERPINB5(30), TDRD15(30), SSX2B(30), ZNF330(29), COX16(29), CHAD(29), PLPPR1(29), ZMAT1(29), FAM83B(29), CLECL1(29), BRINP2(29), C4orf48(29), LMAN1(29), ERO1B(29), TBX18(29), IL6(29), ZNF497(29), ZNF555(29), C1orf210(29), TAB1(28), CNIH1(28), ATP8A2(28), SPATA18(28), TERF2IP(28), PXDC1(28), PKIA(28), RPE(28), KRTAP3-1(28), PITX1(28), DROSHA(28), FLG(28), SLC34A2(28), PLCG2(28), FAM221B(28), AP000781.2(28), TRIM29(27), LIPT1(27), F2RL1(27), PLK3(27), FMR1NB(27), SLC24A3(27), LACTBL1(27), ANKRD34A(27), CHD1L(27), RERG(27), SLC4A5(27), SOWAHC(27), RTL5(27), ATL2(26), EDA2R(26), BIVM(26), TLR2(26), ASCL4(26), PAPSS2(26), LINC01138(26), UBE2D1(26), BMP5(26), SUMO1(26), RSPO3(26), LDLRAD2(26), KLRG2(26), EXOSC6(26), AL117348.2(26), TBC1D3H(26), C7orf77(26), ASB4(25), DEPDC1B(25), MGAT4A(25), ERO1B(25), NLRP1(25), CDADC1(25), DBP(25), CCDC34(25), AMHR2(25), NIPA1(25), LRRC63(25), GAS2L1(25), EED(25), GPC4(25), MTHFD1(25), CCL20(25), PRKAG3(25), TRIM24(25), LRRC8A(25), ZIC3(25), TMEM196(25), FAM156B(25), TCHHL1(25), PGAM4(25), H4C9(25), DNAJA1(24), EBF3(24), BCAS4(24), RBM42(24), ARSG(24), ADPRHL1(24), MAGEA8(24), FAM122C(24), BSDC1(24), TTC16(24), NDNF(24), NPIPA1(24), SBK3(24), PRKAR2B(24), CCT8L1P(24), FGFR3(24), SLC26A4(24), IGF2BP3(24), USP6NL(24), NAA11(24), UTY(24), MFSD6L(24), FAM243B(24), BMP7(23), HPX(23), DHDDS(23), MMP27(23), FAHD2B(23), KCNF1(23), TM4SF4(23), CDKN2AIPNL(23), WDR3(23), STAG3(23), ATP2B3(23), SRI(23), GGA2(23), RHPN2(23), CPLANE2(23), SYT6(23), RAB40B(23), AMT(23), PROSER2(23), TNIK(23), MS4A1(23), MMADHC(23), EMX2(23), CNBD1(23), CD8B2(23), USP27X(23), KCNH2(22), TCL1A(22), CDC42EP3(22), MAP2K1(22), MBOAT1(22), IL1RAPL2(22), PCDHGB1(22), MSH4(22), TRPA1(22), MAPK8(22), PRLR(22), TTR(22), RCBTB1(22), AZIN2(22), LYAR(22), RAET1L(22), IRX3(22), WFDC10B(22), NELL2(22), TEKT4P2(22), AC099489.1(22), AC073612.1(22), SCGB1C2(22), DCN(21), BIRC3(21), CHRNE(21), LANCL1(21), ZSCAN1(21), IQCC(21), SCGB3A1(21), KRT6C(21), ATP11AUN(21), MTRNR2L1(21), ENSG00000277669(21), MAP3K20(21), GRB10(21), PPP3CB(21), CDK18(21), MTFR1L(21), ATL2(21), LRFN3(21), GMPR(21), TTC12(21), GNA14(21), TREML1(21), STEAP1(21), LEP(21), PDIK1L(21), ACTL9(21), FSIP2(21), ADH1C(21), SMIM32(21), RAB27B(20), SULT2B1(20), TIMMDC1(20), PIP(20), SYTL3(20), IHO1(20), CD164L2(20), C14orf39(20), MYCBP(20), HLA-DQA2(20), TBC1D3E(20), CCDC28A(20), ZNF302(20), FAAH(20), EGLN3(20), TCEAL4(20), GPR55(20), RALB(20), ADCY1(20), STAT3(20), COL22A1(20), VANGL1(20), TAS1R2(20), NWD1(20), TEX45(20), LPAL2(20), AL132780.3(20), TBC1D3D(20), SH3YL1(19), ISOC1(19), PPP1R13L(19), WDR91(19), CKAP4(19), SPATA17(19), TGIF1(19), C9orf135(19), RTL1(19), IGF1(19), ANAPC4(19), GGT1(19), CD99L2(19), CNTN3(19), RAP2A(19), RASL11B(19), NTS(19), PIWIL4(19), MPP7(19), SP8(19), TAGAP(19), DDX23(19), GRB2(19), TTLL12(18), CTSZ(18), ATG10(18), MICU3(18), RUNX1(18), CCDC85B(18), LDLRAD2(18), C19orf67(18), FAM47E(18), ASB13(18), ZSCAN5B(18), CDC42BPB(18), SYCE3(18), XK(18), SLC13A1(18), KCNK16(18), MADCAM1(18), AMPD1(18), SLC7A10(18), ACTR1A(18), SHF(18), HSPD1(18), TRMT10A(18), ITGB1(18), RNASEK-C17orf49(18), PRRT3(18), TBXT(18), FAM98B(18), MIR1-1HG-AS1(18), CDK5R1(18), LRRC3B(18), KLHL32(18), PRELP(18), MZT1(18), TMEM231(18), MEIKIN(18), GSTA2(18), LINC02218(18), HOXB7(18), CCDC187(18), GOLGA8T(18), STRAP(17), JAG1(17), VIPR2(17), SCAF1(17), ANO1(17), PLEKHS1(17), FZD1(17), ZNF569(17), EOLA1(17), TMX2(17), OPN3(17), CDK14(17), TOP2B(17), SLC5A5(17), PCDHB6(17), TNFSF14(17), IRF4(17), MBIP(17), PDE7B(17), MYPOP(17), ZNF682(17), CT83(17), LY6G5C(17), TEX13A(17), CWC25(17), FAM27E3(17), RCC1L(17), MLLT6(17), AC117457.1(17), FKBP5(16), DUSP3(16), CRISP2(16), PGPEP1(16), NLRP4(16), SENP8(16), CDH2(16), HPSE(16), FOSL1(16), MRFAP1(16), HMSD(16), AC055811.2(16), AC008758.5(16), RPS6KA6(16), PSMC6(16), HNF4A(16), NCALD(16), SORL1(16), KLK3(16), OLAH(16), SLC18A2(16), PGAM1(16), RRM2(16), ZNF77(16), C14orf39(16), EOLA1(16), LBH(16), SMIM35(16), RAB7B(16), PVR(15), PF4V1(15), IL17A(15), PARD3B(15), CEP104(15), COQ8B(15), GPR55(15), CCN3(15), GLB1L2(15), SLC6A1(15), TMEM41A(15), SLC9B2(15), SYAP1(15), TM4SF1(15), GPR37L1(15), METTL7A(15), PRB3(15), APCDD1L(15), ZNF888(15), HSBP1L1(15), SYS1-DBNDD2(15), TUBB8(15), ENTPD2(15), ROGDI(15), DPYSL2(15), RAB14(15), WNT1(15), STATH(15), CBFA2T3(15), RCBTB2(15), MAP2K5(15), DIRAS3(15), CCDC182(15), SEPTIN1(15), RGPD6(15), PRB3(15), CALM1(15), LINC02693(15), RHBDD2(14), ENTPD2(14), SLC44A1(14), WDR62(14), GPC4(14), KMT5B(14), RIPOR2(14), PLBD1(14), TMEM178A(14), GPR15(14), TIMP4(14), HSD11B1L(14), KNDC1(14), PRSS38(14), PAGE2B(14), ABCC8(14), RAB27B(14), WFDC2(14), RBBP7(14), PPP2R1A(14), ANXA10(14), CCT4(14), CRISP2(14), IVD(14), KSR1(14), RHBDL3(14), HUNK(14), GALM(14), FARS2(14), IFNA5(14), SLC6A1(14), BEND5(14), YWHAB(14), LRRC63(14), FOSL1(14), PLEC(14), ADGRA1(14), ATP11AUN(14), KLRC2(14), ZNF254(14), CD302(14), KIR2DP1(14), TESK2(13), ZFR2(13), FCRL2(13), TMEM155(13), SERPINB12(13), AVEN(13), TEX44(13), RFLNA(13), SEMA4B(13), COL4A5(13), CD302(13), SYNJ2BP-COX16(13), AC018755.2(13), CLUL1(13), NOD1(13), PTPN6(13), SET(13), GNMT(13), SCAF1(13), MLIP(13), SNX30(13), HACD1(13), PKD1L2(13), ZNF16(13), PRR15(13), LINC00518(13), CEACAM19(13), H2AX(13), LINC00336(13), H2BC12(13), ALG3(13), AL136295.1(13), PRKCH(12), PLEKHH1(12), GUCY2F(12), ZSWIM3(12), PI4K2A(12), MRPL10(12), PIGX(12), FAM178B(12), TMEM50A(12), ST6GALNAC3(12), SERINC4(12), DPPA3(12), FBXL22(12), LINC02693(12), SYT3(12), SPATS1(12), COPZ2(12), NLRP2(12), DKK3(12), SDCCAG8(12), ELAVL1(12), MAOB(12), PSEN1(12), CDC14B(12), ASAP3(12), CD40LG(12), MYH1(12), DUSP22(12), FGF1(12), DHDDS(12), RFTN1(12), LEF1(12), SYT14(12), IGSF1(12), LYPD5(12), FGFR4(12), TMEM41A(12), FBP1(12), TMEM63C(12), SLC25A33(12), CDY1(12), RND1(12), TNKS(12), TLR10(12), ZNF843(12), RFLNA(12), OR51B4(12), LDB1(12), INPP5B(12), CYP1B1-AS1(12), AMACR(12), ZNF512(12), AC006486.1(12), SLAIN2(11), SLITRK3(11), GNMT(11), PSPN(11), FBXO44(11), MBD1(11), CTF1(11), ESYT3(11), DPY19L1(11), PHLDA3(11), CCDC60(11), CCDC190(11), KLHL32(11), SLC29A3(11), NT5C1B-RDH14(11), SSX4B(11), SARM1(11), DNAH5(11), EIF2B3(11), MAGT1(11), FCER2(11), P2RX1(11), HPX(11), FNDC4(11), UBA2(11), CRB1(11), KIAA0319(11), MEAK7(11), ARRB2(11), MFHAS1(11), STC1(11), SNX7(11), RHO(11), SAAL1(11), DCAKD(11), CTBP2(11), GRAMD2A(11), OTOP2(11), FAM111B(11), ADH7(11), OXCT2(11), RPL36A-HNRNPH2(11), AL136295.3(11), ANKRD34A(11), MYO19(11), ZNF821(10), EHHADH(10), LMAN2L(10), PMEPA1(10), RHPN2(10), DUSP10(10), TRIM55(10), SPC25(10), CENPH(10), SFXN1(10), SRR(10), KLHL25(10), C5orf52(10), ASB12(10), DEPDC1B(10), GPC1(10), SPEG(10), ST6GAL1(10), RABL2B(10), HDAC6(10), TTC28(10), SALL1(10), RHEB(10), EIF4H(10), CAND1(10), TXNDC15(10), SPATS2(10), APOE(10), PHF11(10), DERL1(10), CCN3(10), MCL1(10), ARHGAP18(10), ADHFE1(10), REXO4(10), ADCY8(10), GPX8(10), RIC3(10), MS4A14(10), CEL(10), RELA(10), LRRC75A(10), ODF3L1(10), UMODL1-AS1(10), GPR141(10), FAM217B(10), ZNF492(10), PAGE2B(10), CTAGE8(10), CLDN23(10), AL049634.2(10), AC008763.2(10), DDX52(10), DEF6(9), FSTL3(9), ABCD1(9), IL27RA(9), LHPP(9), FBXO9(9), IRF6(9), PCDHB14(9), THAP10(9), CLIC6(9), NIBAN3(9), CANT1(9), FJX1(9), TEX33(9), C17orf58(9), IDO2(9), ARMH1(9), AP000721.1(9), CASP10(9), CUL1(9), PRKCZ(9), ATP5F1D(9), FZD3(9), LHX2(9), SOD3(9), SAYSD1(9), GBE1(9), PRAMEF2(9), NKX2-4(9), FAM104A(9), ACTL6A(9), GREB1L(9), EFHD2(9), CYP4B1(9), SNCA(9), ZAN(9), TKFC(9), LYZL4(9), IKZF3(9), PITX2(9), LINC01600(9), SERPINB7(9), DRD5(9), CST5(9), RBKS(9), ZNF570(9), NLRP13(9), PRM3(9), HNRNPCL4(9), ZNF93(9), NANOS3(9), LITAF(9), ARMCX6(9), C9orf92(9), ZNF888(9), VSTM5(9), LINGO3(9), PPP3R1(9), ARIH2OS(9), TSPY3(9), ZNF737(9), PEDS1(9), SYNJ2BP-COX16(9), AC018755.2(9), CT45A10(9), LENG9(9), H4C7(9), NKAIN1(8), MROH8(8), CISD1(8), WFIKKN1(8), CBWD2(8), HORMAD1(8), THSD7B(8), RPIA(8), PPP2R2B(8), TMEM63C(8), MS4A14(8), TACR3(8), TOMM5(8), NHEJ1(8), COL13A1(8), KRTAP10-3(8), LINC00205(8), KIR3DL3(8), GBA3(8), CCDC166(8), LENG9(8), CX3CL1(8), ZNF275(8), HAL(8), CDKN3(8), CTSZ(8), MROH8(8), EEA1(8), PDGFRB(8), YPEL5(8), C10orf95(8), THAP10(8), THEMIS2(8), IER3(8), KYAT3(8), LPAR6(8), ZNF287(8), HORMAD1(8), MYH15(8), ARMT1(8), LRRC27(8), CNBD2(8), PFKM(8), OBSCN(8), NEUROD1(8), SNIP1(8), CCDC51(8), UCMA(8), HDGFL3(8), ZNF3(8), NLRC3(8), CXXC4(8), GCSAML(8), SOCS5(8), MYEOV(8), TRIB1(8), TCP11L1(8), C5orf64(8), HLA-DQB1(8), TMEM86B(8), SIAH2(8), PRKAG1(8), RNASE10(8), LRRC37B(8), KRT14(8), COL4A5(8), DTHD1(8), ARHGAP11A(8), CXorf66(8), LINC00326(8), SAA2-SAA4(8), GPR142(8), DMRTC1(8), TAF15(8), KCNE1B(8), SPATA31A5(8), COCH(7), LIF(7), NUDT15(7), APCDD1(7), TGM4(7), SPRY1(7), SCNN1B(7), SLC25A42(7), LDOC1(7), EPGN(7), MZT1(7), SMIM7(7), HNRNPUL2-BSCL2(7), MRPS17(7), SMIM11B(7), KCNE1B(7), ARNTL2(7), PKN2(7), FOSL2(7), PAK3(7), SMARCA2(7), NDC80(7), SERPIND1(7), PVALB(7), SCML2(7), CHCHD2(7), MYF5(7), SLCO1B3(7), KHDRBS2(7), EPB41L5(7), POMC(7), EHBP1(7), VPS4B(7), PCDHB8(7), LRRC29(7), IL1B(7), FRMD8(7), DLGAP5(7), RIPK3(7), EXOSC2(7), DLG4(7), FAM189A2(7), BTBD16(7), SUOX(7), DYRK3(7), CSGALNACT1(7), SYT8(7), AMN1(7), ARL11(7), PLOD2(7), MR1(7), ZFYVE27(7), GAB3(7), ZNF394(7), KCNF1(7), F2RL1(7), STK32C(7), MOGAT2(7), XRRA1(7), DTYMK(7), ZBTB49(7), AGXT(7), DAB1(7), GOLGA8Q(7), EXT1(7), DNM1P46(7), DDX41(7), TMEM50A(7), CCR4(7), ADAP2(7), TAFA3(7), HYAL3(7), TSPYL4(7), C5orf52(7), PLSCR1(7), NCCRP1(7), VN1R5(7), AL139353.1(7), C6orf47(7), CD177(7), NUDT19(7), PPT2(7), TSPAN19(7), TRHDE-AS1(7), DNAAF4(7), AC068896.1(7), C19orf84(7), MTRNR2L12(7), KRTAP10-7(7), FAM25BP(7), ZIC2(6), ASB1(6), CAPN6(6), MID2(6), GCKR(6), TMPRSS11E(6), APOL1(6), SLC25A17(6), SGPP1(6), GFAP(6), IL10(6), UGT3A1(6), SESN3(6), KLHL35(6), FYCO1(6), PTK2(6), PCDH7(6), HNRNPA0(6), PGPEP1L(6), TANGO2(6), CLDN24(6), HYKK(6), ASTL(6), ZNF140(6), MUC21(6), ARRDC5(6), TMEM213(6), FMO9P(6), AC010327.2(6), TBC1D3I(6), MBTPS2(6), SNAI2(6), SARS1(6), MSMO1(6), LY75(6), CYFIP2(6), ATP2B4(6), DNAJC25(6), GNA15(6), HIPK2(6), CASS4(6), SEL1L3(6), NLRP1(6), HNRNPM(6), FGF14(6), NBN(6), STK3(6), STEAP1B(6), GPLD1(6), EVA1A(6), HOXB5(6), P4HA1(6), RAB9B(6), MBOAT7(6), EIF2S2(6), SGPP1(6), YEATS4(6), FBXL16(6), WDFY4(6), HABP4(6), NAPSA(6), EIF2S1(6), TESPA1(6), ZSCAN9(6), FCHSD2(6), SQOR(6), CYP1B1(6), SLC38A4(6), PDX1(6), RMC1(6), ZMYND15(6), DTL(6), ARF1(6), ITPKB(6), CCNB3(6), LRP12(6), POLR3A(6), HMGA2(6), AK9(6), MYO1E(6), CD1D(6), GPBP1L1(6), COX6B2(6), TEDC2(6), NUDT2(6), PHYHIPL(6), VDAC2(6), NDST2(6), GPRIN1(6), ADRA1B(6), CMTM8(6), KSR2(6), LPAR3(6), PARP15(6), AGFG1(6), NWD2(6), GSTA3(6), SLC16A11(6), SPHK1(6), SGF29(6), RPS6KA3(6), ERN1(6), CSRNP3(6), OFCC1(6), FAM43B(6), ANKRD45(6), TMPRSS2(6), SPEM2(6), TEX33(6), SPATA21(6), IDO2(6), RNF222(6), SLC29A3(6), PEG3(6), TMEM239(6), HLA-DRA(6), GPX3(6), KRTAP4-9(6), ZNF879(6), ZNF702P(6), ZFP91-CNTF(6), AC104581.2(6), AC104109.3(6), CCL15-CCL14(6), BARX2(5), LY75(5), ZCWPW1(5), SERPIND1(5), MOSPD1(5), MOGAT3(5), CHRNB4(5), SH2D3A(5), SOX3(5), KIAA0513(5), FCHSD2(5), BCAR3(5), FBLN7(5), LRRC27(5), GLB1L3(5), RIC3(5), SPATA33(5), FBXW10(5), KLHDC7A(5), OXTR(5), TSPYL4(5), ZNF669(5), NUDT19(5), AC002310.4(5), GAS7(5), SCN4A(5), CYB561(5), CLTCL1(5), FSTL3(5), MBD3(5), DNAJC10(5), MOK(5), XPO1(5), PLOD1(5), LPCAT2(5), IKZF5(5), PNPLA3(5), PPP2CB(5), GYS1(5), VRK3(5), DBP(5), IL17A(5), CAP2(5), KIF20A(5), PFDN1(5), IRF6(5), MUC5B(5), ATP8A1(5), BTN2A3P(5), SSUH2(5), PTPRE(5), NUMB(5), TBRG4(5), HS6ST1(5), ANKRD42(5), NKD1(5), IRF8(5), ERBB2(5), CYP17A1(5), GPHA2(5), TMEM86A(5), CWC27(5), ENPP3(5), MAGEA8(5), WDR19(5), PDE9A(5), FAM189B(5), CD200R1(5), CPA3(5), CREBRF(5), C8orf34(5), MRPL16(5), MARS1(5), SCNN1B(5), TMEM150A(5), TACR3(5), HOXD4(5), KRT8(5), CHCHD7(5), FOXB1(5), CES4A(5), PHLDA3(5), SPRYD4(5), C20orf197(5), HNRNPCL1(5), HTR1D(5), C11orf71(5), TMIE(5), TMEM252(5), GET1(5), PRR30(5), CHCHD2P9(5), ERAS(5), C19orf67(5), ZNF626(5), C19orf54(5), SUMO2(5), PAX5(5), ILRUN(5), ZNF429(5), RPE(5), SH3BGRL2(5), TMEM184B(5), NEU1(5), PRAMEF9(5), TMEM170B(5), MFSD2B(5), SIAH3(5), ZNF880(5), EXOC3-AS1(5), ZNF630(5), FAM30A(5), C2orf92(5), LEFTY1(5), GPR162(5), OR11H7(5), GOLGA8S(5), AC090227.2(5), AC090360.1(5), MAGIX(5), DOC2B(5), MPC1(4), ST6GALNAC2(4), CA12(4), MRPS31(4), ZNF451(4), ST3GAL5(4), DDX59(4), FYTTD1(4), CD70(4), PROZ(4), TPST2(4), KCTD1(4), PADI3(4), ZNF214(4), MEPE(4), TSPAN7(4), TBC1D31(4), TSC22D3(4), MPZ(4), CCDC116(4), ASRGL1(4), CCDC68(4), SOX14(4), SPRR1B(4), PNMA8A(4), EFHC2(4), BLOC1S5(4), ZNF79(4), NUP62CL(4), SH3BGRL2(4), ALPK2(4), EXOC3-AS1(4), FBXO17(4), ENSG00000183729(4), GCLC(4), DDX11(4), BARX2(4), WDR37(4), KCNH2(4), STYK1(4), CTSA(4), ZC3H15(4), MGAT4A(4), ZNF506(4), CAD(4), POMGNT1(4), MYL12A(4), FA2H(4), CTSH(4), ANXA13(4), AURKC(4), CRHR2(4), ELF2(4), CYTIP(4), ST3GAL5(4), ATF2(4), LRRC42(4), IRAG2(4), CYP20A1(4), ONECUT2(4), GPR75(4), PLBD1(4), GAD1(4), AIPL1(4), F12(4), TIMM10B(4), PCNA(4), PDE6A(4), NGF(4), PDGFRA(4), RIPK1(4), TTPA(4), NXPE4(4), REM2(4), RLBP1(4), ABCC12(4), WDTC1(4), CNGA3(4), NICN1(4), KCNMB1(4), HDAC8(4), SIDT2(4), HNMT(4), FOXO1(4), GPATCH11(4), EPG5(4), ELMO1(4), SLA(4), DDX19B(4), GIP(4), HIPK4(4), MPP3(4), PPM1K(4), GUCY1A1(4), SHH(4), VCP(4), MFAP4(4), HSP90B1(4), LDHC(4), RBPJ(4), PKIG(4), TSNARE1(4), SPSB1(4), CLEC7A(4), IL16(4), FBXO45(4), FOXG1(4), RPP38-DT(4), TAC4(4), YIPF7(4), ERICH3(4), ALX1(4), OR56A4(4), PGPEP1L(4), USP18(4), BRI3BP(4), INPP5J(4), METTL7A(4), ROR1(4), SP1(4), FAM9C(4), C6orf132(4), C10orf99(4), S100A16(4), ZFP28(4), ZNF43(4), KCNRG(4), LRRTM3(4), APCDD1L(4), SREBF2(4), LINC02868(4), PCDHA7(4), INSYN1(4), SYT3(4), GNAT3(4), SPINK13(4), C1orf229(4), C5orf67(4), HNRNPUL2-BSCL2(4), MIF(4), TMEM150C(4), FOXD1(4), AL512785.2(4), CCDC166(4), AC107871.1(4), KIR3DP1(4), BAHCC1(4), CYFIP1(4), CCL4L2(4), NEFL(4), PPIAL4F(4), CLCA1(3), DGCR2(3), SNW1(3), SLC25A14(3), SLC22A2(3), FBXO2(3), EEF1AKMT3(3), KCNS1(3), NT5E(3), MARCHF9(3), SYT2(3), SSC4D(3), PRDM14(3), TMEM163(3), FUT6(3), WDR19(3), CD1B(3), FMNL3(3), FCAMR(3), LMBRD1(3), FBXO45(3), ZDHHC24(3), CHST2(3), HOXD8(3), POU6F1(3), ZSWIM9(3), SAMD9(3), AP002373.1(3), AP002748.5(3), GLRX2(3), MYO16(3), RRM2B(3), ELN(3), ITIH4(3), INTS13(3), SNCAIP(3), PKM(3), RPS6KA2(3), WDR62(3), FMO4(3), OPHN1(3), PTPRC(3), KCNK2(3), PPIE(3), ALG9(3), RTRAF(3), SULT2B1(3), RAPGEF4(3), AGO1(3), NANS(3), HCN2(3), CRKL(3), GRK3(3), DESI1(3), CNIH1(3), CD40(3), HCK(3), ZNF516(3), SLC25A14(3), KLHL4(3), CCL22(3), EIF3J(3), UBE2W(3), FCGRT(3), CCNE1(3), SYNGR4(3), ERF(3), RPL28(3), RAD51C(3), PTGES3(3), KRT18(3), ACRBP(3), GNB3(3), PHC1(3), KLRB1(3), VNN1(3), SLC29A1(3), TENT5A(3), THG1L(3), GOLPH3(3), NR3C1(3), TIMMDC1(3), PRKAR2A(3), GADD45A(3), BCAS2(3), SDHB(3), DYNC2I2(3), YIPF4(3), GPR31(3), NAA50(3), ZC3H7A(3), NMI(3), KCNS1(3), FASTKD3(3), COL21A1(3), TRIP10(3), RBM42(3), SIN3B(3), RAC2(3), NEDD8(3), PGPEP1(3), PNCK(3), EDA2R(3), CASP9(3), FST(3), KLRC1(3), YARS1(3), CYP27A1(3), PCDH8(3), ITM2B(3), IL10(3), CDK5RAP2(3), TLR4(3), TMEM8B(3), IGFBPL1(3), ETFBKMT(3), MARCHF9(3), DUSP6(3), MCTP2(3), CIB3(3), SAE1(3), FAM71E1(3), PRDM16(3), PTPRF(3), LHX9(3), THSD7B(3), AC073896.1(3), ILDR1(3), SHISAL2B(3), PSPH(3), RSU1(3), SAA4(3), ZNF214(3), C2orf50(3), THRSP(3), C4orf33(3), FRMD4A(3), VENTX(3), TMEM123(3), C16orf89(3), RAB39B(3), GPR61(3), DHRS1(3), IFNAR2(3), HOXB13(3), CLIC6(3), NLRP4(3), FMNL3(3), AKNAD1(3), CRYGC(3), ELOVL7(3), CRYL1(3), ANKRD2(3), CFAP52(3), CHP2(3), GNGT2(3), MYO5B(3), ZNF526(3), TXNDC2(3), LETM1(3), PXDC1(3), VXN(3), OTUD7A(3), UBE2E3(3), NCBP2L(3), HSFX1(3), MALT1(3), GNG12(3), HPSE(3), TNFRSF10C(3), CRYBG2(3), B3GNT8(3), NIM1K(3), DMAP1(3), CIITA(3), MB21D2(3), SHISA2(3), CLRN3(3), EHMT1(3), ZNF322(3), MRPS11(3), CCDC125(3), ZNRF3(3), FAM110C(3), DMRTC1B(3), CCDC137(3), CLDN24(3), KIF18B(3), SECISBP2(3), MAGEB5(3), MRTFA(3), TLR7(3), CD47(3), ACSL5(3), WWP2(3), RCSD1(3), CAPZA2(3), RIPPLY2(3), ASAH2B(3), OR2H1(3), C9orf135(3), FBXO48(3), KRTAP9-6(3), SMIM7(3), ADM5(3), ELFN1(3), SRRM5(3), MRLN(3), CFAP97D1(3), TEX35(3), ZNF722P(3), PCDHAC1(3), OR13A1(3), ZNF865(3), SRSF8(3), RASSF5(3), PTGES3L(3), AC010327.2(3), AC024592.3(3), SLC6A14(3), SMIM17(3), ATP6V1FNB(3), ADRA2B(3), FCGBP(3), OR4E1(3), ZNF229(3), C11orf98(3), CASS4(2), GSTT2(2), SLC52A3(2), PLIN3(2), ETHE1(2), PRUNE2(2), TMEM97(2), STEAP3(2), PLXDC2(2), KRT17(2), PRPH(2), MRPL44(2), MED4(2), GH2(2), STRA6(2), ANP32D(2), HNRNPLL(2), HTR3B(2), SETD9(2), SIM2(2), KIAA1586(2), DEGS2(2), C1QTNF4(2), GPR156(2), LYNX1(2), KCNJ14(2), CCDC157(2), ZNF257(2), ZNF98(2), GPATCH3(2), PCDHGA1(2), KBTBD13(2), PCDHA11(2), AL513165.2(2), ST20-MTHFS(2), AC105052.3(2), TMEM176A(2), KLHL13(2), NDUFAF7(2), PDK2(2), DNAH9(2), VTA1(2), ZBTB32(2), NR1H4(2), TBPL1(2), ASTE1(2), VCL(2), FBXO42(2), MAPK9(2), KIF1B(2), CDK17(2), HAGH(2), ERBB3(2), TLE2(2), ASB1(2), COASY(2), EPHA8(2), MYO3B(2), P2RY10(2), NKAIN1(2), HADHA(2), ABCB1(2), AQP6(2), MMP2(2), ARHGAP4(2), RGS1(2), PLEKHG2(2), CDC23(2), TMEM38B(2), HSD17B7P2(2), SYNGR1(2), RANGAP1(2), ASB2(2), SLC52A3(2), DNTTIP1(2), GPR143(2), MOSPD1(2), MCF2(2), DHRS12(2), ZNF821(2), CSK(2), SPAG1(2), CLPTM1(2), CRX(2), SERPINE1(2), TMEM176B(2), TNFSF8(2), UBE2R2(2), HPS1(2), RPS6KB1(2), IL2(2), BST1(2), PRR4(2), COPZ1(2), HCFC2(2), ZNF451(2), SRF(2), GABRG2(2), PDE4D(2), LIFR(2), SLC30A3(2), CLIP4(2), FANCL(2), IL1R2(2), ID2(2), EPHA4(2), ZNF684(2), PIK3R3(2), RCAN3(2), INVS(2), DLST(2), ZC2HC1C(2), ARMH3(2), TEK(2), CCDC170(2), NUDCD1(2), HSPH1(2), ZFP30(2), APAF1(2), ABCC11(2), UBL3(2), LPGAT1(2), G0S2(2), PMS2P5(2), INHA(2), CTCFL(2), PI3(2), TBCC(2), CDKN1A(2), ID1(2), PRR12(2), LRRC61(2), KRT17(2), CLN6(2), BBOX1(2), CDC16(2), ZBTB46(2), CEP85(2), SLC6A8(2), SYNE1(2), GFAP(2), BARX1(2), PDHA1(2), SERPINF1(2), ANKEF1(2), PCED1A(2), SEC14L4(2), TMTC1(2), GSTM1(2), CYP2J2(2), ELF5(2), COQ10A(2), KIAA1614(2), MED4(2), IL36A(2), SLC22A7(2), FGFBP1(2), MGARP(2), ANXA7(2), RASGEF1B(2), INTS12(2), MTMR6(2), GRTP1(2), BBS4(2), SEC11A(2), TIGD7(2), SPATA22(2), C18orf21(2), SLC16A3(2), TBCD(2), TNFRSF11A(2), APP(2), ZNF787(2), NOSIP(2), CFAP74(2), MAEL(2), SYT2(2), NPHP1(2), FBLN7(2), GALNT13(2), NYAP2(2), CPNE9(2), ATG12(2), GFRA3(2), SLC18B1(2), SSC4D(2), FATE1(2), PAMR1(2), CTF1(2), DCP1B(2), ITIH2(2), PABPC3(2), TMEM163(2), TMEM178A(2), SPOCK1(2), CDYL(2), RANBP2(2), PTPRR(2), CMIP(2), KCTD15(2), GDPD1(2), ASZ1(2), PLCL2(2), CYP2U1(2), MARVELD1(2), CLDN8(2), MPZ(2), ATP5MC1(2), ZDHHC1(2), ZBTB8A(2), FTCD(2), YDJC(2), SHANK2(2), FGF19(2), EXTL2(2), CFAP221(2), TDRD10(2), CCT3(2), ADORA1(2), GLB1L(2), NFASC(2), COX18(2), POLR2H(2), H2AZ1(2), ZNF589(2), WDR41(2), CDC20B(2), GJB7(2), AK8(2), GLB1L3(2), AMN(2), ASPG(2), ACSM1(2), GLYATL1(2), NOD2(2), SNX20(2), HSD11B1L(2), KLK13(2), LDLRAD4(2), ADAL(2), PARM1(2), RNASE6(2), CXCL8(2), FASN(2), GPR37L1(2), LGALS9B(2), ELOVL6(2), DLGAP1(2), CAVIN3(2), ZNF581(2), ZIK1(2), GPR34(2), FAM90A1(2), SHLD1(2), DHCR7(2), PLK3(2), SLC16A13(2), UCP2(2), GAPT(2), HOXD8(2), AMIGO3(2), ZNF135(2), FOXL1(2), TYMSOS(2), RIMKLA(2), OR2B11(2), SPINK6(2), ERBB4(2), KLHDC7A(2), RAD23A(2), ZNF154(2), MFSD5(2), NPIPA1(2), SETD3(2), TANGO2(2), PNMA3(2), CTAG1B(2), PPP1R2(2), POU6F1(2), GDF3(2), EFNA5(2), ODF4(2), ZSWIM9(2), LINC00839(2), WWOX(2), FCAR(2), ZNF501(2), NAP1L2(2), SPATC1(2), KRTAP19-5(2), MITF(2), NAP1L1(2), RSBN1L(2), ZKSCAN4(2), FYB2(2), ARL4C(2), FOCAD(2), INSC(2), C2orf80(2), ZBED6CL(2), BLOC1S3(2), ANKRD34B(2), GJB5(2), SLC35E2B(2), PLEKHG4(2), SFTA2(2), NOXO1(2), GUCA2A(2), FITM2(2), CCER1(2), S100A10(2), NRARP(2), DDX39B(2), SLC9A6(2), INPP5F(2), PCMTD2(2), OOEP(2), TCEA3(2), SLC44A4(2), VWA7(2), SAMD9(2), LCMT1(2), KRTAP19-8(2), CFAP99(2), EWSAT1(2), ST13P5(2), UGT2B11(2), SCART1(2), SLC6A10P(2), ARHGEF33(2), MS4A4E(2), C16orf90(2), PEX26(2), ATAD3C(2), POM121L12(2), BTBD19(2), ETDB(2), SPANXB1(2), TEX46(2), USP17L1(2), ZNF826P(2), HLA-DPA1(2), ZBTB22(2), CKMT1B(2), TMEM250(2), TXNDC5(2), KIR3DL3(2), C4orf48(2), GSTA1(2), TMEM225B(2), PCDHA11(2), ATP6V1E2(2), TAF11L14(2), LSM14A(2), AL096870.1(2), MRC1(2), AC026954.2(2), ANXA8(2), AC004223.3(2), ZNF723(2), ZNF728(2), SLC25A53(2), SSX4B(2), C17orf50(2), AL603832.3(2), AL024498.2(2), LINC01138(2), ZNF280B(2), PRSS2(2), AK2(1), AP2B1(1), CAMK1G(1), CSDE1(1), CD22(1), TACC3(1), ISL1(1), CHDH(1), GLT8D1(1), RUFY3(1), CD74(1), PRKCH(1), TRIO(1), CTPS2(1), MCUR1(1), PHF21B(1), PRKCQ(1), ASPM(1), PRR11(1), GUCY2C(1), DGCR2(1), WIPI1(1), TCF3(1), ADGRL1(1), CACNG4(1), ATP12A(1), ZCWPW1(1), PCM1(1), UBE2D4(1), SCGN(1), DNAJA1(1), NME8(1), HSD17B14(1), BAX(1), SLC4A11(1), RCOR1(1), UPRT(1), CRISP3(1), SCD(1), CATSPERG(1), GSTT2(1), YPEL1(1), NEFH(1), APOBEC3H(1), TTLL12(1), TAB1(1), APOL1(1), COCH(1), SNW1(1), DHRS7(1), RPS6KA5(1), C14orf93(1), DHRS2(1), BMP7(1), FERMT1(1), KLF5(1), CCDC113(1), AAGAB(1), RIPK2(1), EIF3E(1), TULP2(1), PIH1D1(1), PPP6R1(1), PLIN3(1), CDC37(1), HAS1(1), PRPF31(1), UPK1A(1), ETHE1(1), RUNDC3B(1), OGDH(1), ANKRD7(1), PRUNE2(1), CASC3(1), CHRNE(1), PSMD11(1), KRT32(1), CNTNAP1(1), DUSP3(1), HLF(1), TMEM97(1), FOXN1(1), SLAIN2(1), UGT2B10(1), ZNF330(1), TBC1D19(1), ELP4(1), CRTAM(1), APOC3(1), ALDH2(1), SPRING1(1), C12orf57(1), TREML2(1), SLC22A2(1), SMOC2(1), CCN6(1), NNT(1), TFG(1), NCBP2(1), SLC41A3(1), IL1A(1), STEAP3(1), TTC31(1), STK25(1), SLC1A4(1), PARD3B(1), CEP104(1), RAP1A(1), FBXO2(1), C1orf21(1), MPL(1), CHRNB4(1), KIF14(1), DDX59(1), CA14(1), DENND1A(1), TTLL2(1), PLXDC2(1), WASHC3(1), CRISPLD1(1), TMIGD3(1), POLM(1), SLC25A16(1), HVCN1(1), ITPR2(1), EEF1AKMT3(1), H2BW1(1), BATF3(1), HMGB1P1(1), PCK1(1), EFNB2(1), TEKT3(1), MIF4GD(1), CD70(1), CST8(1), HECTD3(1), CCR7(1), RHOJ(1), CRYGN(1), ALDH1A2(1), NDUFA10(1), TEX101(1), NINJ1(1), PEX11B(1), USP29(1), RAF1(1), RGS22(1), FCRL2(1), FBXO44(1), CHI3L1(1), CCNA1(1), MYH11(1), MBD2(1), CCNB1(1), DSC2(1), DSC1(1), BIVM(1), UGT2B28(1), KCP(1), NT5E(1), PRPH(1), ZC3H10(1), KIAA0513(1), MRPL44(1), VILL(1), CHAD(1), GH2(1), TOR1A(1), ARHGEF39(1), KIF13A(1), TINAG(1), STRA6(1), BCAR3(1), BRDT(1), CYP2C8(1), OIT3(1), NAAA(1), COL2A1(1), FRMD6(1), FANCI(1), MAP1LC3B(1), SECTM1(1), MBD1(1), SOD1(1), SYTL1(1), RGL1(1), OSR1(1), HNRNPLL(1), RPS27A(1), LIPT1(1), GRIP2(1), NFKBIZ(1), UGT3A1(1), MTFR2(1), OGT(1), CETN2(1), PRDM14(1), CDKN2B(1), GLYAT(1), LYPD1(1), DOCK1(1), UEVLD(1), ATP6V1G3(1), MEPE(1), RPIA(1), CEP112(1), EPHB1(1), VOPP1(1), PIP4P2(1), PPM1J(1), SETD9(1), FZD7(1), MICU3(1), N6AMT1(1), TSPAN7(1), FUT6(1), PPP2R2B(1), TBC1D31(1), ARMC12(1), DYRK1A(1), GALNT14(1), CD1B(1), COPG2(1), AC005041.1(1), SIM2(1), IRX6(1), NAE1(1), PIP(1), ZNF222(1), IQCC(1), SPC24(1), SPATA17(1), FCMR(1), FCAMR(1), MSX1(1), CDC42EP3(1), PBXIP1(1), SPTA1(1), ATXN7(1), FYCO1(1), C1orf50(1), ZNF691(1), SPRY1(1), TMEM155(1), TMEM174(1), SFXN1(1), ZNF704(1), GBX1(1), PIGA(1), ZCCHC24(1), ZNF22(1), TMEM52B(1), TMX3(1), CCDC68(1), NYAP1(1), ACSF2(1), URM1(1), GOLGA6C(1), NIBAN3(1), SPATA33(1), C19orf33(1), ATG16L2(1), FADD(1), LMBRD1(1), DEGS2(1), ARF4(1), BDKRB2(1), FEN1(1), FAM178B(1), CHTF8(1), COL4A3(1), UMOD(1), RNASE3(1), PCDH7(1), TM4SF4(1), NIPA1(1), VGLL2(1), CNGB3(1), LONRF2(1), LSM3(1), MUC7(1), JUNB(1), CHD7(1), KCND3(1), TBCA(1), PIK3CD(1), GPHN(1), FBXL14(1), FBXW10(1), EIF2AK3(1), ISG20(1), ATOH1(1), C1QTNF4(1), CTSW(1), PSMD1(1), WFIKKN2(1), ATP2A2(1), MYO1H(1), CHST2(1), PCSK1(1), UBQLNL(1), CCDC85B(1), NUPR1(1), RIMS2(1), VPS37D(1), DCAF4L2(1), FMR1NB(1), TEX44(1), LMO7DN(1), TMEM52(1), TMEM139(1), SELENOW(1), FJX1(1), LYNX1(1), HCLS1(1), TMEM64(1), OR5T1(1), USH1G(1), DEXI(1), P2RY8(1), UBE2E2(1), KCNJ14(1), OTOL1(1), SATB1(1), MAFA(1), GLUD2(1), CCDC60(1), IZUMO1R(1), NOG(1), FIGLA(1), NPIPA5(1), KCNJ12(1), SERINC4(1), B3GALT5-AS1(1), LSAMP(1), SPATA8(1), IFIT1(1), DMWD(1), ZNF829(1), NBPF6(1), RGS7BP(1), MIR22HG(1), C17orf58(1), BCR(1), LUZP2(1), DPPA3(1), SAMD11(1), CCDC157(1), AD000671.1(1), ZNF669(1), FAM83G(1), ASTL(1), HACD4(1), H1-0(1), STK40(1), CPNE4(1), ASB13(1), ZNF140(1), NBPF4(1), SLC30A10(1), PIWIL2(1), ZNF98(1), FBXL22(1), PIGN(1), STPG3(1), FAM118B(1), NBEAP2(1), ZNF560(1), NUP62CL(1), KRTAP4-1(1), PAPSS2(1), GPATCH3(1), ALPK2(1), PRC1(1), MAP3K3(1), DMD(1), RBM20(1), HSD17B8(1), TMEM235(1), HSPA1B(1), PRAMEF14(1), C6orf15(1), MUC21(1), DEFB121(1), DHX16(1), MIR1915HG(1), TRIM27(1), MALRD1(1), TTC25(1), PCDHGA1(1), PABPN1L(1), AC105052.1(1), CNEP1R1(1), CCDC85C(1), ARRDC5(1), KRTAP20-4(1), KRTAP2-3(1), KRTAP3-1(1), SULT1A4(1), FAM209B(1), MAGEB1(1), ZSWIM7(1), RPL17-C18orf32(1), SYCE3(1), PPP2R2A(1), FADS3(1), OR2A1(1), HSBP1L1(1), ERVMER34-1(1), DHFR(1), PRPS1L1(1), AC011005.1(1), TMEM253(1), TSPY4(1), H2BS1(1), KBTBD13(1), PCDHA13(1), MRPS17(1), PCDHGC5(1), EGFL8(1), SERPINB10(1), ELFN2(1), LINC01011(1), CLRN2(1), FER1L5(1), HS3ST5(1), LRRC37BP1(1), PCDHA12(1), HOXA10(1), EIF5AL1(1), EEF1G(1), SYS1-DBNDD2(1), AP002373.1(1), ZNF10(1), AP002748.5(1), AL513165.2(1), MAP1LC3B2(1), RTEL1(1), SPECC1L-ADORA2A(1), AL162231.3(1), ZHX1-C8orf76(1), UBE2Q2L(1), SLC22A31(1), HSPB9(1), AC010542.3(1), HPR(1), RBM8A(1), AC008687.1(1), AC008403.1(1), AC003002.2(1), HSFX2(1), H3Y2(1), TRABD2B(1), FBXO17(1), AC010422.6(1), MTRNR2L6(1), H2AC19(1), AL353588.1(1), F8A3(1), SRCIN1(1), TBC1D3E(1), FP565260.4(1)
[INFO] Coefs. list
[1] “ABAT, ABCC2, AC233723.1, AC245033.1, ACSL3, ACSM5, AKT1S1, ANGPTL4, ANO4, AQP8, BEX4, BEX5, BTN2A2, C1QTNF6, CAMTA1, CLEC17A, CPA2, CPXM2, CR2, CRYGD, CTSL, DKK1, DSG2, DTNBP1, EPHX1, FAM83A, FLNC, FRZB, FUT4, GALNT2, GOLGA6D, GPD1L, HERPUD1, HLA-DOB, JOSD1, KIR3DL2, KRT6A, LDLRAD3, MARCHF4, MELTF, NOS3, NPAS2, NTSR1, NUMBL, PITX3, PLEKHB1, PZP, RHOF, RPE65, SEPTIN2, SERBP1, SLC46A3, SLC4A8, SQLE, STAP1, STOX1, TFDP1, TLE1, TM4SF19, VAX1”
[INFO] Coefs. list
[1] “ABL1, AC005726.1, ACO2, ACTA1, ACTBL2, ACTC1, ACTL6B, ACTL7B, ACTL8, ACTR3B, ACTRT3, AKT1, AKT2, ALB, ANKRD53, AP000311.1, CALB2, CALM3, CD79A, CDC42, CDK15, CDK4, CDK5, CDY2B, CFTR, CPS1, CRYGD, DECR1, EEF1E1-BLOC1S5, EP300, EPHA6, EPHA7, FGFR1, FURIN, FYN, GAPDH, GATA4, GLI2, GLI3, GMPS, GSK3A, HSPA2, HSPA4, HSPA8, INSR, KAT8, LCK, MAPK1, MAPK11, MAPK12, MAPK13, MRAS, MYO18B, NFKB1, NME8, NOS3, NRAS, OAS2, OAS3, OASL, PCSK9, PIK3CG, PITX3, POTEJ, PRDM10, PRKACB, PRKAR1A, PRKCA, PRKCD, PSKH2, RAB11A, RAC1, RAC3, RAD23B, RB1, RHOF, RHOQ, RHOV, RPS6KA1, RRAS, SIRT1, SLC2A4, SMAD3, SRC, SST, STK11, TNF, TOMM34, TSPO, TSPY1, TSPY3, TYRO3, UBA52, UBC, UBL4B, UMPS, VEGFA, WT1, YES1, YWHAE, ZFAND4, ZNF479”
[INFO] Coefs. list
[1] “ENSG00000021300, ENSG00000035720, ENSG00000088543, ENSG00000100558, ENSG00000102409, ENSG00000102445, ENSG00000110900, ENSG00000112308, ENSG00000114638, ENSG00000117477, ENSG00000120211, ENSG00000121236, ENSG00000124466, ENSG00000124508, ENSG00000125498, ENSG00000125775, ENSG00000128298, ENSG00000133466, ENSG00000134297, ENSG00000134827, ENSG00000142621, ENSG00000145107, ENSG00000147689, ENSG00000148704, ENSG00000161055, ENSG00000161714, ENSG00000163975, ENSG00000164794, ENSG00000165730, ENSG00000166448, ENSG00000166669, ENSG00000166845, ENSG00000171357, ENSG00000171360, ENSG00000172155, ENSG00000175664, ENSG00000175874, ENSG00000176029, ENSG00000179397, ENSG00000179709, ENSG00000183044, ENSG00000187912, ENSG00000188483, ENSG00000188910, ENSG00000189431, ENSG00000197062, ENSG00000198208, ENSG00000198788, ENSG00000198967, ENSG00000203943, ENSG00000206077, ENSG00000206531, ENSG00000224916, ENSG00000240403, ENSG00000251349, ENSG00000259330, ENSG00000262481, ENSG00000269179, ENSG00000276085, ENSG00000280071, ENSG00000280969”
[INFO] Coefs. list
[1] “ABAT, ABCC2, AC245033.1, ACTC1, ADM, AHSG, AKT1S1, ANGPTL4, ANKRD65, ANP32A, AP000311.1, AP3S1, BEX4, CALB2, CBFA2T3, CCDC149, CCDC88C, CD200R1L, CDKAL1, CERS4, CIDEC, CLEC17A, CLEC20A, CPXM2, CRYGD, DKK1, DNAJB4, DTNBP1, E2F7, ELMO2, ENPP5, ENTPD1, EPHX1, FAM83A, FBN2, FDXACB1, FLNC, GALNT2, GNG7, GOLGA6D, GPD1L, GPR1, GUCA2B, HOXA13, INSL4, IRX5, ISL2, KCNG1, KIR2DL1, KIR3DL2, KLHDC8B, KRT38, KRT6A, KYNU, LCE5A, LDLRAD3, LINGO2, MELTF, MTHFS, MYO6, NEIL3, NGRN, OR14C36, PLEKHB1, POPDC3, PRORY, RASSF10, RCVRN, RGS20, RHCG, RHOF, RHOV, RPS6KL1, RUBCNL, SETDB2, SLC46A3, SOWAHC, SPANXA1, STAP1, STIMATE, TDRD1, TEX26, TLE1, TMEM130, TRPA1, TSPY3, TXLNB, UQCRB, USP4, UTS2, VAX1, VDAC1, WFDC3, WWC2-AS2, ZBTB18, ZNF479, ZNF502”
[INFO] Coefs. list
[1] “ABL1, AC005726.1, ACTA1, ACTA2, ACTBL2, ACTC1, ACTL6B, ACTL8, ACTR1B, ACTR2, ACTRT3, AKT1, ANKRD53, AP000311.1, ARG2, ARL14, AURKC, CALB2, CALM2, CALN1, CD79A, CDC42, CDH1, CDK15, CDK4, DECR1, DIRAS1, EHMT2, EPHA1, FGF2, FGF8, FURIN, FUT4, FYN, GAPDH, GATA4, GCG, GLI2, GSK3A, HRAS, HSPA4, HSPA8, INS, KIT, KLF10, KRAS, LATS2, LCK, LEF1, LGR4, LINGO2, MAP3K19, MAPK11, MAPK12, MAPK13, MAPK4, MAPK7, MRAS, MYBL1, MYC, MYH14, NEDD4, NFKBIA, NOS3, NOTCH1, NRAS, OASL, PIK3CG, PIM2, PITX3, POTEJ, PPP3CA, PPP3CC, PRKACB, PRKCA, PRKCD, PRKX, PSKH2, RAB25, RAC1, RAD23B, RHOF, RHOQ, RHOV, RIPK4, RIT2, RPS6KA1, RRAS, SEPTIN2, SPANXA1, SRC, STK11, TF, TFRC, TGFB1, TLE1, TNFRSF11A, TP53, TSPO, TTC16, TYRO3, UBC, UBD, UBL4B, UMPS, VAX1, VEGFA, WT1, YES1, ZFAND4, ZNF165, ZNF479”
[INFO] Coefs. list
[1] “AC005697.1, AC010325.1, ADRA2B, AKT1S1, BEX4, BEX5, BTN2A2, C19orf48, C1QL2, C1QTNF6, C20orf141, C3orf18, CA5B, CCDC149, CDIN1, CIDEC, CLEC17A, DBP, DNAJC28, EFCAB8, EMC6, ENSG00000270168, FAM210B, FAM83A, GATD3B, GNG7, GOLGA6D, HHIPL2, HSDL1, IER5L, KIR2DL1, KIR3DL2, KLHDC8B, KRT38, KRT6A, LDLRAD3, LURAP1, MELTF, MSLNL, MYLIP, NEIL3, NRG4, OLFM1, PEDS1, PLCD3, PLEKHA8P1, PLEKHB1, PRAMEF1, SLC46A3, STAP1, TCP10L2, TM4SF19, TMEM130, UCN2, UPK1B, VAX1, ZNF750, ZSCAN26”
NULL
## [INFO] balanced.sets: TRUE
## [INFO] calc.params.old: FALSE
## [INFO] coding.genes: TRUE
## [INFO] degree.correlation: pearson
## [INFO] degree.cutoff: 0.000
## [INFO] degree.type: string
## [INFO] degree.unweighted: TRUE
## [INFO] handle.duplicates: keep_first
## [INFO] log2: TRUE
## [INFO] n.cores: 14.000
## [INFO] normalization: center
## [INFO] ntimes: 5000.000
## [INFO] project: luad.data.2018.10.17
## [INFO] seed: 1985.000
## [INFO] subset: Inf
## [INFO] subtract.surv.column: (I do not know how to display this)
## [INFO] target.vars: list(alpha = 0.1, vars = 110), list(alpha = 0.1, vars = 56), list(alpha = 0.1, vars = 97)
## [INFO] tissue: primary.solid.tumor
## [INFO] train: 0.800